1990s
- 1992 (20th) The Simpsons - Fox
- TaleSpin - Walt Disney Television
- The Ren & Stimpy Show - Nickelodeon
- Darkwing Duck - Walt Disney Television Animation
- Tiny Toon Adventures - Amblin/Warner Bros. Television
- 1993 (21st) The Simpsons - 20th Century Fox Television
- The Little Mermaid – Walt Disney Television Animation
- Tiny Toon Adventures – Warner Bros. Animation
- The Ren & Stimpy Show – Nickelodeon
- Batman: The Animated Series – Warner Bros. Animation
- 1994 (22nd) The Simpsons - Fox Television, Gracie Films, Film Roman
- Animaniacs - Warner Bros. Television Animation
- Batman: The Animated Series - Warner Bros. Television Animation
- The Critic - Gracie Films, Film Roman
- The Ren & Stimpy Show - Nickelodeon
- 1995 (23rd) The Simpsons - Gracie Films, Film Roman
- Batman: The Animated Series - Warner Bros. Animation
- Animaniacs - Warner Bros. Animation
- The Maxx - MTV Animation, Rough Draft Studios
- The Tick - Sunbow Productions, Graz Entertainment
- 1996 (24th) The Simpsons - 20th Century Fox Television
- Rugrats - Klasky Csupo
- Animaniacs - Warner Bros. Animation
- The Powerpuff Girls
- Freakazoid! - Warner Bros. Animation
- 1997 (25th) The Simpsons - 20th Century Fox, Film Roman Productions, Gracie Films, Klasky Csupo
- Dexter's Laboratory
- King of the Hill - 20th Century Fox, Film Roman Productions
- Pinky and the Brain - Warner Bros., Warner Bros. Animation, Amblin Entertainment
- The Tick - 20th Century Fox, Akom Production Company, Fox Children's Network, Graz Entertainment, Sunbow Productions
- 1998 (26th)
- Daytime: The New Batman/Superman Adventures - Warner Bros. Television Animation
- The Angry Beavers - Nickelodeon Animation Studios, Oh Yeah! Cartoons
- Animaniacs - Warner Bros. Television Animation
- Pinky and the Brain - Warner Bros. Television Animation
- Primetime: The Simpsons - Gracie Films in association with 20th Century Fox Television
- Dexter's Laboratory - Hanna-Barbera Cartoons
- King of the Hill - 20th Century Fox Television, Deedle Dee Productions, Judgemental Films, 3 Arts Entertainment
- South Park - Comedy Central
- A Pinky & The Brain Halloween - Warner Bros. Television Animation
- Daytime: The New Batman/Superman Adventures - Warner Bros. Television Animation
- 1999 (27th) The Simpsons - Gracie Films in association with 20th Century Fox Television
- Batman Beyond - Warner Bros. Television Animation
- Futurama - The Curiosity Company in association with 20th Century Fox Television
- King of the Hill - 20th Century Fox Television in association with Deedle-Dee Productions, Judgemental Films, and 3 Arts Entertainment
- The New Batman/Superman Adventures - Warner Bros. Television Animation
Read more about this topic: Annie Award For Best Animated Television Production, Winners