Phylogenetic Analysis

Some articles on phylogenetics, phylogenetic, analysis, phylogenetic analysis:

List Of Phylogenetics Software
... This list of phylogenetics software is a compilation of computational phylogenetics software used to produce phylogenetic trees ... maximum parsimony (also simply referred to as parsimony), UPGMA, Bayesian phylogenetic inference, maximum likelihood and distance matrix methods ... Workflow Platform Workflow platform dedicated to phylogenetic and general bioinformatic analysis Inference of phylogenetic trees using Distance, Maximum Likelihood, Maximum Parsimony, Bayesian ...
Roscoea - Evolution and Phylogeny
... A 2002 classification of the Zingiberaceae family, based on molecular phylogenetic analysis, placed Roscoea in the tribe Zingibereae, subfamily Zingiberoideae ... A molecular phylogenetic analysis of 15 species of Roscoea, based on nuclear ribosomal DNA, showed that the genus was monophyletic, and distinct from the closely related genus Cautleya ... ngainoi, discovered after the phylogenetic analysis discussed above, is found roughly between these two species, in the Indian state of Manipur ...
Aetosaurs - Classification - Phylogeny
... Stagonolepis, and Typothorax were included in the phylogenetic analysis ... but were not considered to be an indication of a close phylogenetic relationship the body is covered in dorsal and ventral armor to form a complete carapace, and the ... In Parrish's phylogenetic analysis, Aetosaurus was found to be the most basal member of the clade, the earliest to diverge after the most recent common ...
Cyathus - Infrageneric Classification - Phylogenetic Analysis
... The 2007 publication of phylogenetic analyses of DNA sequence data of numerous Cyathus species has cast doubt on the validity of the morphology-based infrageneric classifications ... can be grouped into three genetically related clades This analysis shows that rather than fruit body structure, spore size is generally a more reliable character for segregating species groups in ...
Sequence Alignment - Phylogenetic Analysis - Scoring Functions
... It can be very useful and instructive to try the same alignment several times with different choices for scoring matrix and/or gap penalty values and compare the results ... Regions where the solution is weak or non-unique can often be identified by observing which regions of the alignment are robust to variations in alignment parameters ...

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